Subject: PLOS Computational Biology Volume 15(1) January 2019 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: January 01, 2019 to January 31, 2019

Editorials

Ten simple rules on how to create open access and reproducible molecular simulations of biological systems

Ten Simple Rules for avoiding and resolving conflicts with your colleagues

Ten simple rules for writing statistical book reviews

Education

Designing and running an advanced Bioinformatics and genome analyses course in Tunisia

Research Articles

Context-explorer: Analysis of spatially organized protein expression in high-throughput screens

Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods

Short-term synaptic depression can increase the rate of information transfer at a release site

A computational model to understand mouse iron physiology and disease

Locus Coeruleus tracking of prediction errors optimises cognitive flexibility: An Active Inference model

Calcium phosphate precipitation inhibits mitochondrial energy metabolism

Mutation, drift and selection in single-driver hematologic malignancy: Example of secondary myelodysplastic syndrome following treatment of inherited neutropenia

Protein'protein binding supersites

Sour grapes and sweet victories: How actions shape preferences

A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types

Using the drug-protein interactome to identify anti-ageing compounds for humans

Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer

Computational translation of genomic responses from experimental model systems to humans

PAIRUP-MS: Pathway analysis and imputation to relate unknowns in profiles from mass spectrometry-based metabolite data

Deep image reconstruction from human brain activity

On identifying collective displacements in apo-proteins that reveal eventual binding pathways

The finite state projection based Fisher information matrix approach to estimate information and optimize single-cell experiments

STRFs in primary auditory cortex emerge from masking-based statistics of natural sounds

Sequential infection experiments for quantifying innate and adaptive immunity during influenza infection

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

Thermodynamic model of gene regulation for the Or59b olfactory receptor in Drosophila

OpenCASA: A new open-source and scalable tool for sperm quality analysis

Generalizing clusters of similar species as a signature of coexistence under competition

Top-down inputs drive neuronal network rewiring and context-enhanced sensory processing in olfaction

A Gestalt inference model for auditory scene segregation

Differential mobility and local variation in infection attack rate

Epithelial stratification shapes infection dynamics

A diurnal flux balance model of Synechocystis sp. PCC 6803 metabolism

Multi-study inference of regulatory networks for more accurate models of gene regulation

Kinetic and thermodynamic insights into sodium ion translocation through the mu -opioid receptor from molecular dynamics and machine learning analysis

Systems biology reveals how altered TGFbeta signalling with age reduces protection against pro-inflammatory stimuli

Cellular determinants of metabolite concentration ranges

Spatial synchronization codes from coupled rate-phase neurons

A low-threshold potassium current enhances sparseness and reliability in a model of avian auditory cortex

Learning the sequence of influenza A genome assembly during viral replication using point process models and fluorescence in situ hybridization

Social dynamics modeling of chrono-nutrition

Mechanistic framework predicts drug-class specific utility of antiretrovirals for HIV prophylaxis

Prediction of ultra-high-order antibiotic combinations based on pairwise interactions

Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures

Dynamical differential expression (DyDE) reveals the period control mechanisms of the Arabidopsis circadian oscillator

Predicting change: Approximate inference under explicit representation of temporal structure in changing environments

Corrections

Correction: clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Notice of Republication: Simulating Cortical Development as a Self Constructing Process: A Novel Multi-Scale Approach Combining Molecular and Physical Aspects

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