Subject: PLOS Computational Biology Volume 14(4) April 2018 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: April 01, 2018 to April 30, 2018

Editorials

New computational approaches to understanding molecular protein function

Ten simple rules for responsible referencing

Education

Ten quick tips for teaching programming

Eleven quick tips for finding research data

Review

Automated plant species identification'Trends and future directions

Research Articles

Spatial regularity control of phyllotaxis pattern generated by the mutual interaction between auxin and PIN1

Effect of Ca2+ on the promiscuous target-protein binding of calmodulin

Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources

A probabilistic, distributed, recursive mechanism for decision-making in the brain

Need for speed: An optimized gridding approach for spatially explicit disease simulations

Interactions of spatial strategies producing generalization gradient and blocking: A computational approach

A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa

Toward a theory of coactivation patterns in excitable neural networks

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

Principles that govern competition or co-existence in Rho-GTPase driven polarization

Assessing the durability and efficiency of landscape-based strategies to deploy plant resistance to pathogens

Physics-based simulations of aerial attacks by peregrine falcons reveal that stooping at high speed maximizes catch success against agile prey

Biobeam'Multiplexed wave-optical simulations of light-sheet microscopy

A modelling approach for exploring muscle dynamics during cyclic contractions

Whole-body iron transport and metabolism: Mechanistic, multi-scale model to improve treatment of anemia in chronic kidney disease

Using pseudoalignment and base quality to accurately quantify microbial community composition

Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms

Allostery in the dengue virus NS3 helicase: Insights into the NTPase cycle from molecular simulations

Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases

Multiscale modelization in a small virus: Mechanism of proton channeling and its role in triggering capsid disassembly

Origins of scale invariance in vocalization sequences and speech

A computational study of astrocytic glutamate influence on post-synaptic neuronal excitability

A computational model of shared fine-scale structure in the human connectome

On the role of extrinsic noise in microRNA-mediated bimodal gene expression

Propagating annotations of molecular networks using in silico fragmentation

Bayesian reconstruction of transmission within outbreaks using genomic variants

Biogeography and environmental conditions shape bacteriophage-bacteria networks across the human microbiome

EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos

Optimal dynamic control approach in a multi-objective therapeutic scenario: Application to drug delivery in the treatment of prostate cancer

Compositional clustering in task structure learning

Decision making improves sperm chemotaxis in the presence of noise

Divergent genome evolution caused by regional variation in DNA gain and loss between human and mouse

Exploiting glycan topography for computational design of Env glycoprotein antigenicity

Correcting for batch effects in case-control microbiome studies

Black-boxing and cause-effect power

Computational mechanisms underlying cortical responses to the affordance properties of visual scenes

Identifying robust hysteresis in networks

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP

Switchable slow cellular conductances determine robustness and tunability of network states

A machine learning based framework to identify and classify long terminal repeat retrotransposons

Rational metareasoning and the plasticity of cognitive control

Mechanical unfolding reveals stable 3-helix intermediates in talin and alpha -catenin

Organization of the core respiratory network: Insights from optogenetic and modeling studies

Effects of spatiotemporal HSV-2 lesion dynamics and antiviral treatment on the risk of HIV-1 acquisition

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning

Personalizing physical exercise in a computational model of fuel homeostasis

Material and shape perception based on two types of intensity gradient information

RosettaAntibodyDesign (RAbD): A general framework for computational antibody design

Effects of growth rate, cell size, motion, and elemental stoichiometry on nutrient transport kinetics

Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape

Automated evaluation of quaternary structures from protein crystals

Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties

Quantitative analysis reveals crosstalk mechanisms of heat shock-induced attenuation of NF-kappa B signaling at the single cell level

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