Subject: PLOS Computational Biology Volume 14(11) November 2018 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit


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New Articles in PLOS Computational Biology

PUBLISHED: November 01, 2018 to November 30, 2018


Putting benchmarks in their rightful place: The heart of computational biology

Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars

Ten simple rules for collaboratively writing a multi-authored paper


Strategies and opportunities for promoting bioinformatics in Zimbabwe

Research Articles

Active dendrites regulate the spatiotemporal spread of signaling microdomains

Motif-Aware PRALINE: Improving the alignment of motif regions

Efficient pedigree recording for fast population genetics simulation

Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter

Modeling driver cells in developing neuronal networks

Synthetic protein alignments by CCMgen quantify noise in residue-residue contact prediction

Prediction and classification in equation-free collective motion dynamics

Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA

Modulation of voltage-dependent K+ conductances in photoreceptors trades off investment in contrast gain for bandwidth

A computational analysis of dynamic, multi-organ inflammatory crosstalk induced by endotoxin in mice

A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs)

The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history

Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes

Comparative structural dynamic analysis of GTPases

Visual physiology of the layer 4 cortical circuit in silico

Functional mechanisms underlie the emergence of a diverse range of plasticity phenomena

A regularity index for dendrites - local statistics of a neuron's input space

Oscillations in working memory and neural binding: A mechanism for multiple memories and their interactions

Invasion and effective size of graph-structured populations

Moth olfactory receptor neurons adjust their encoding efficiency to temporal statistics of pheromone fluctuations

Bayesian phylodynamic inference with complex models

Comparing Bayesian and non-Bayesian accounts of human confidence reports

Inferring interaction partners from protein sequences using mutual information

Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions

Patterning the insect eye: From stochastic to deterministic mechanisms

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes

Towards a molecular basis of ubiquitin signaling: A dual-scale simulation study of ubiquitin dimers

Simulations of blood as a suspension predicts a depth dependent hematocrit in the circulation throughout the cerebral cortex

Rosetta FunFolDes ' A general framework for the computational design of functional proteins

Adaptive feature detection from differential processing in parallel retinal pathways

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

Binding of the general anesthetic sevoflurane to ion channels

Determinants of early afterdepolarization properties in ventricular myocyte models

Comprehensive computational modelling of the development of mammalian cortical connectivity underlying an architectonic type principle

RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks

A Bayesian mixture modelling approach for spatial proteomics

Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch

powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire

Atlases of cognition with large-scale human brain mapping

Coevolving residues inform protein dynamics profiles and disease susceptibility of nSNVs

Deterministic response strategies in a trial-and-error learning task

Tox_(R)CNN: Deep learning-based nuclei profiling tool for drug toxicity screening

How pupil responses track value-based decision-making during and after reinforcement learning

Mechanistic insight into spontaneous transition from cellular alternans to arrhythmia'A simulation study


Correction: Assessment of ab initio models of protein complexes by molecular dynamics


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