Subject: PLOS Computational Biology Volume 14(10) October 2018 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit


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New Articles in PLOS Computational Biology

PUBLISHED: October 01, 2018 to October 31, 2018


Ten simple rules for scientists: Improving your writing productivity

Ten simple rules when considering retirement

Ten simple rules for developing good reading habits during graduate school and beyond


What to know before forecasting the flu


Wrangling distributed computing for high-throughput environmental science: An introduction to HTCondor

Ten quick tips for getting the most scientific value out of numerical data

Research Articles

Linking signal detection theory and encoding models to reveal independent neural representations from neuroimaging data

Cooperation of dual modes of cell motility promotes epithelial stress relaxation to accelerate wound healing

Exploring the impact of inoculum dose on host immunity and morbidity to inform model-based vaccine design

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine

meaRtools: An R package for the analysis of neuronal networks recorded on microelectrode arrays

Prediction of gene regulatory enhancers across species reveals evolutionarily conserved sequence properties

A Kirchhoff-Nernst-Planck framework for modeling large scale extracellular electrodiffusion surrounding morphologically detailed neurons

Noise propagation in an integrated model of bacterial gene expression and growth

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals

In-silico dynamic analysis of cytotoxic drug administration to solid tumours: Effect of binding affinity and vessel permeability

Interactive reservoir computing for chunking information streams

Rotation of sex combs in Drosophila melanogaster requires precise and coordinated spatio-temporal dynamics from forces generated by epithelial cells

Modeling effects of voltage dependent properties of the cardiac muscarinic receptor on human sinus node function

Seizure pathways: A model-based investigation

Precision in a rush: Trade-offs between reproducibility and steepness of the hunchback expression pattern

Self-organized traffic via priority rules in leaf-cutting ants

State dependence of stimulus-induced variability tuning in macaque MT

Internal but not external noise frees working memory resources

Genomic data integration systematically biases interactome mapping

Data-driven brain network models differentiate variability across language tasks

Predicting B cell receptor substitution profiles using public repertoire data

A multi-scale layer-resolved spiking network model of resting-state dynamics in macaque visual cortical areas

Modeling large fluctuations of thousands of clones during hematopoiesis: The role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque

Virus and CTL dynamics in the extrafollicular and follicular tissue compartments in SIV-infected macaques

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

Predicting how and when hidden neurons skew measured synaptic interactions

Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

Dilution and titration of cell-cycle regulators may control cell size in budding yeast

An agent-based model for drug-radiation interactions in the tumour microenvironment: Hypoxia-activated prodrug SN30000 in multicellular tumour spheroids

Quantum chemistry reveals thermodynamic principles of redox biochemistry

Modeling sensory-motor decisions in natural behavior

Structural and dynamic basis of substrate permissiveness in hydroxycinnamoyltransferase (HCT)

Representations of regular and irregular shapes by deep Convolutional Neural Networks, monkey inferotemporal neurons and human judgments

Computational discovery of dynamic cell line specific Boolean Networks from multiplex time-course data

Suboptimal community growth mediated through metabolite crossfeeding promotes species diversity in the gut microbiota

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions

Modeling and subtleties of K-Ras and Calmodulin interaction

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis

A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments

Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase


Correction: Elucidation of molecular kinetic schemes from macroscopic traces using system identification


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