Subject: PLOS Computational Biology Volume 13(4) April 2017 Content-Type: text/html; charset="utf-8" Content-Transfer-Encoding: 8bit

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New Articles in PLOS Computational Biology

PUBLISHED: April 01, 2017 to April 28, 2017

Editorial

Ten simple rules for making research software more robust

Review

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints

Research Articles

Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling

Polarization and migration in the zebrafish posterior lateral line system

Role of non-native electrostatic interactions in the coupled folding and binding of PUMA with Mcl-1

Sequence dependency of canonical base pair opening in the DNA double helix

The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation

Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock

Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data

Geospatial characteristics of measles transmission in China during 2005'2014

Computation and measurement of cell decision making errors using single cell data

Dynamic compensation, parameter identifiability, and equivariances

Functional asymmetry and plasticity of electrical synapses interconnecting neurons through a 36-state model of gap junction channel gating

How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation

Dose-response relationships for environmentally mediated infectious disease transmission models

Modeling disordered protein interactions from biophysical principles

Amino acid composition predicts prion activity

Increased decision thresholds enhance information gathering performance in juvenile Obsessive-Compulsive Disorder (OCD)

Human behavioral complexity peaks at age 25

Peptide probes derived from pertuzumab by molecular dynamics modeling for HER2 positive tumor imaging

Inferring modulators of genetic interactions with epistatic nested effects models

Heterogeneous firing responses predict diverse couplings to presynaptic activity in mice layer V pyramidal neurons

Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor

Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors

Dynamics of adaptive immunity against phage in bacterial populations

Semantic prioritization of novel causative genomic variants

Effect of transcription factor resource sharing on gene expression noise

Probabilistic fluorescence-based synapse detection

Achieving global perfect homeostasis through transporter regulation

Robust information propagation through noisy neural circuits

Erroneous energy-generating cycles in published genome scale metabolic networks: Identification and removal

Towards a theory of cortical columns: From spiking neurons to interacting neural populations of finite size

A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thalian

Exhaustive search of linear information encoding protein-peptide recognition

Cheminformatics-aided discovery of small-molecule Protein-Protein Interaction (PPI) dual inhibitors of Tumor Necrosis Factor (TNF) and Receptor Activator of NF-kappa B Ligand (RANKL)

Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples

Intrinsically-generated fluctuating activity in excitatory-inhibitory networks

Representational models: A common framework for understanding encoding, pattern-component, and representational-similarity analysis

Predicting explorative motor learning using decision-making and motor noise

An aggregation-removal model for the formation and size determination of post-synaptic scaffold domains

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time

Personalized glucose forecasting for type 2 diabetes using data assimilation

Variable habitat conditions drive species covariation in the human microbiota

When do correlations increase with firing rates in recurrent networks?

Corrections

Correction: Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression

Correction: The missing link: Predicting connectomes from noisy and partially observed tract tracing data

Correction: Order Under Uncertainty: Robust Differential Expression Analysis Using Probabilistic Models for Pseudotime Inference

Correction: Deciding Not to Decide: Computational and Neural Evidence for Hidden Behavior in Sequential Choice

Correction: Spatial separation of two different pathways accounting for the generation of calcium signals in astrocytes

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