Subject: Nucleic Acids Research Table of Contents for 26 September 2019 ------=_Part_418674436.1569269577301 Content-Type: text/plain;charset=UTF-8 This email is intended for bionet@evol.biology.mcmaster.ca. ------=_Part_418674436.1569269577301 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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Nucleic Acids Research  
Volume 47 Issue 17
 
26 September 2019
 
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Gene Regulation, Chromatin and Epigenetics
 
 
 
RNA polymerase II plays an active role in the formation of gene loops through the Rpb4 subunit border= 
 
Paula Allepuz-Fuster ; Michael J O'Brien; Noelia González-Polo; Bianca Pereira; Zuzer Dhoondia ...
 
 
Functional interplay between Mediator and RNA polymerase II in Rad2/XPG loading to the chromatin border= 
 
Adrien Georges ; Diyavarshini Gopaul; Cyril Denby Wilkes; Nathalie Giordanengo Aiach; Elizaveta Novikova ...
 
 
KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity border= 
 
Anne H Turberfield ; Takashi Kondo; Manabu Nakayama; Yoko Koseki; Hamish W King ...
 
 
The Pol IV largest subunit CTD quantitatively affects siRNA levels guiding RNA-directed DNA methylation border= 
 
Jered M Wendte ; Jeremy R Haag; Olga M Pontes; Jasleen Singh; Sara Metcalf ...
 
 
The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis border= 
 
Laura Ferrafiat ; David Pflieger; Jasleen Singh; Michael Thieme; Marcel Böhrer ...
 
 
SET8 prevents excessive DNA methylation by methylation-mediated degradation of UHRF1 and DNMT1 border= 
 
Huifang Zhang ; Qinqin Gao; Shuo Tan; Jia You; Cong Lyu ...
 
 
Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 border= 
 
Filippo M Cernilogar ; Stefan Hasenöder; Zeyang Wang; Katharina Scheibner; Ingo Burtscher ...
 
 
DREAM and RB cooperate to induce gene repression and cell-cycle arrest in response to p53 activation border= 
 
Sigrid Uxa ; Stephan H Bernhart; Christina F S Mages; Martin Fischer; Robin Kohler ...
 
 
Post-transcriptional gene silencing triggers dispensable DNA methylation in gene body in Arabidopsis  border= 
 
Christelle Taochy; Agnès Yu ; Nicolas Bouché; Nathalie Bouteiller; Taline Elmayan ...
 
 
 
Genome Integrity, Repair and Replication
 
 
 
Synthetic lethality between BRCA1 deficiency and poly(ADP-ribose) polymerase inhibition is modulated by processing of endogenous oxidative DNA damage border= 
 
Sara Giovannini ; Marie-Christine Weller; Simone Repmann; Holger Moch; Josef Jiricny
 
 
Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability border= 
 
Eric E Bryant ; Ivana Šunjevarić; Luke Berchowitz; Rodney Rothstein; Robert J D Reid
 
 
CTCF cooperates with CtIP to drive homologous recombination repair of double-strand breaks border= 
 
Soon Young Hwang ; Mi Ae Kang; Chul Joon Baik; Yejin Lee; Ngo Thanh Hang ...
 
 
Trypanosoma brucei ribonuclease H2A is an essential R-loop processing enzyme whose loss causes DNA damage during transcription initiation and antigenic variation border= 
 
Emma Briggs ; Kathryn Crouch; Leandro Lemgruber; Graham Hamilton; Craig Lapsley ...
 
 
 
RNA and RNA-protein complexes
 
 
 
A low-complexity region in human XRN1 directly recruits deadenylation and decapping factors in 5²'3² messenger RNA decay border= 
 
Chung-Te Chang ; Sowndarya Muthukumar; Ramona Weber; Yevgen Levdansky; Ying Chen ...
 
 
Structural and phenotypic analysis of Chikungunya virus RNA replication elements border= 
 
Catherine Kendall; Henna Khalid ; Marietta Müller; Dominic H Banda; Alain Kohl ...
 
 
Staufen1 and UPF1 exert opposite actions on the replacement of the nuclear cap-binding complex by eIF4E at the 5² end of mRNAs border= 
 
Kwon Jeong ; Incheol Ryu; Joori Park; Hyun Jung Hwang; Hongseok Ha ...
 
 
 
Methods Online
 
 
 
Achieving tight control of a photoactivatable Cre recombinase gene switch: new design strategies and functional characterization in mammalian cells and rodent border= 
 
Kyle Meador ; Christina L Wysoczynski; Aaron J Norris; Jason Aoto; Michael R Bruchas ...
 
 
coMethDMR: accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studies with continuous phenotypes border= 
 
Lissette Gomez ; Gabriel J Odom; Juan I Young; Eden R Martin; Lizhong Liu ...
 
 
Delivering Cas9/sgRNA ribonucleoprotein (RNP) by lentiviral capsid-based bionanoparticles for efficient ˜hit-and-run' genome editing border= 
 
Pin Lyu ; Parisa Javidi-Parsijani; Anthony Atala; Baisong Lu
 
 
Ultra-soft X-ray system for imaging the early cellular responses to X-ray induced DNA damage border= 
 
Jakub A Kochan ; Matthias van den Belt; Julia von der Lippe; Emilie C B Desclos; Barbara Steurer ...
 
 
Single-molecule detection of deoxyribonucleoside triphosphates in microdroplets border= 
 
Boris Breiner ; Kerr Johnson; Magdalena Stolarek; Ana-Luisa Silva; Aurel Negrea ...
 
 
Novel enzymatic single-nucleotide modification of DNA oligomer: prevention of incessant incorporation of nucleotidyl transferase by ribonucleotide-borate complex border= 
 
Eui Kyoung Jang ; Ryeo Gang Son; Seung Pil Pack
 
 
 
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