Subject: Nucleic Acids Research Table of Contents for 20 June 2018 ------=_Part_1365850721.1529775010233 Content-Type: text/plain;charset=UTF-8 This email is intended for ------=_Part_1365850721.1529775010233 Content-Type: text/html;charset=UTF-8 Oxford Academic
New issue alert
Nucleic Acids Research  
Volume 46 Issue 11
20 June 2018
Chemical Biology and Nucleic Acid Chemistry
Mechanistic alternatives for peptide bond formation on the ribosome border= 
Masoud Kazemi; Jaka Sočan; Fahmi Himo; Johan Åqvist
Cell penetrating thiazole peptides inhibit c-MYC expression via site-specific targeting of c-MYC G-quadruplex border= 
Debasish Dutta ; Manish Debnath; Diana Müller; Rakesh Paul; Tania Das ...
Identifying and avoiding off-target effects of RNase H-dependent antisense oligonucleotides in mice border= 
Peter H Hagedorn; Malene Pontoppidan; Tina S Bisgaard; Marco Berrera; Andreas Dieckmann ...
Computational Biology
bpRNA: large-scale automated annotation and analysis of RNA secondary structure border= 
Padideh Danaee; Mason Rouches; Michelle Wiley; Dezhong Deng ; Liang Huang ...
Towards a map of cis-regulatory sequences in the human genome border= 
Meng Niu; Ehsan Tabari; Pengyu Ni; Zhengchang Su
Base-flipping dynamics from an intrahelical to an extrahelical state exerted by thymine DNA glycosylase during DNA repair process border= 
Lin-Tai Da ; Jin Yu
Gene Regulation, Chromatin and Epigenetics
Histone deacetylation promotes transcriptional silencing at facultative heterochromatin border= 
Beth R Watts ; Sina Wittmann; Maxime Wery; Camille Gautier; Krzysztof Kus ...
LSD1 mediates metabolic reprogramming by glucocorticoids during myogenic differentiation border= 
Kotaro Anan; Shinjiro Hino ; Noriaki Shimizu; Akihisa Sakamoto; Katsuya Nagaoka ...
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities border=  
Sarah Rennie; Maria Dalby; Marta Lloret-Llinares ; Stylianos Bakoulis; Christian Dalager Vaagensø ...
DNA-mediated dimerization on a compact sequence signature controls enhancer engagement and regulation by FOXA1 border= 
Xuecong Wang; Yogesh Srivastava; Aleksander Jankowski; Vikas Malik ; Yuanjie Wei ...
Widespread enhancer activation via ERalpha mediates estrogen response in vivo during uterine development 
Wendy N Jefferson ; H Karimi Kinyamu; Tianyuan Wang; Adam X Miranda; Elizabeth Padilla-Banks ...
A novel long non-coding RNA from NBL2 pericentromeric macrosatellite forms a perinucleolar aggregate structure in colon cancer border= 
Gabrijela Dumbović ; Josep Biayna; Jordi Banús; Johanna Samuelsson; Anna Roth ...
StpA and Hha stimulate pausing by RNA polymerase by promoting DNA'DNA bridging of H-NS filaments border= 
Beth A Boudreau; Daniel R Hron ; Liang Qin; Ramon A van der Valk; Matthew V Kotlajich ...
The KDM4A/KDM4C/NF-kappa B and WDR5 epigenetic cascade regulates the activation of B cells border= 
Kuo-Hsuan Hung; Yong H Woo; I-Ying Lin ; Chin-Hsiu Liu; Li-Chieh Wang ...
Emerin modulates spatial organization of chromosome territories in cells on softer matrices border= 
Roopali Pradhan; Devika Ranade; Kundan Sengupta
The longevity SNP rs2802292 uncovered: HSF1 activates stress-dependent expression of FOXO3 through an intronic enhancer border= 
Valentina Grossi ; Giovanna Forte; Paola Sanese; Alessia Peserico; Tugsan Tezil ...
Genome Integrity, Repair and Replication
PRMT5-mediated arginine methylation of TDP1 for the repair of topoisomerase I covalent complexes border=  
Ishita Rehman; Suparna M Basu; Subhendu K Das ; Sangheeta Bhattacharjee; Arijit Ghosh ...
Regional conformational flexibility couples substrate specificity and scissile phosphate diester selectivity in human flap endonuclease 1 border= 
Ian A Bennet; L David Finger; Nicola J Baxter; Benjamin Ambrose ; Andrea M Hounslow ...
Flap endonuclease overexpression drives genome instability and DNA damage hypersensitivity in a PCNA-dependent manner border= 
Jordan R Becker; David Gallo; Wendy Leung; Taylor Croissant; Yee Mon Thu ...
Physical and functional interplay between PCNA DNA clamp and Mre11'Rad50 complex from the archaeon Pyrococcus furiosus border= 
Gaëlle Hogrel; Yang Lu; Sébastien Laurent; Etienne Henry; Clarisse Etienne ...
APE1 deficiency promotes cellular senescence and premature aging features  
Mengxia Li; Xiao Yang; Xianfeng Lu ; Nan Dai; Shiheng Zhang ...
Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species border= 
Lauren M Lui; Andrew V Uzilov; David L Bernick; Andrea Corredor ; Todd M Lowe ...
Translational control plays an important role in the adaptive heat-shock response of Streptomyces coelicolor border= 
Giselda Bucca; Radhika Pothi; Andrew Hesketh; Carla Möller-Levet; David A Hodgson ...
Molecular Biology
The TubR'centromere complex adopts a double-ring segrosome structure in Type III partition systems border= 
Bárbara Martín-García ; Alejandro Martín-González; Carolina Carrasco; Ana M Hernández-Arriaga; Rubén Ruíz-Quero ...
Modulation of H-NS transcriptional silencing by magnesium border= 
W Ryan Will; Patrick J Whitham ; Philip J Reid; Ferric C Fang
Nucleic Acid Enzymes
Microprocessor depends on hemin to recognize the apical loop of primary microRNA border= 
Tuan Anh Nguyen; Joha Park; Thi Lieu Dang; Yeon-Gil Choi; V Narry Kim
Dicer cleaves 5²-extended microRNA precursors originating from RNA polymerase II transcription start sites border= 
Peike Sheng ; Christopher Fields; Kelsey Aadland; Tianqi Wei; Oralia Kolaczkowski ...
Base modifications affecting RNA polymerase and reverse transcriptase fidelity border= 
Vladimir Potapov; Xiaoqing Fu ; Nan Dai; Ivan R Corrêa, Jr; Nathan A Tanner ...
RNA'DNA and DNA'DNA base-pairing at the upstream edge of the transcription bubble regulate translocation of RNA polymerase and transcription rate 
Maria KIreeva; Cyndi Trang; Gayane Matevosyan; Joshua Turek-Herman ; Vitaly Chasov ...
RNA and RNA-protein complexes
Positive-sense RNA viruses reveal the complexity and dynamics of the cellular and viral epitranscriptomes during infection border= 
Will McIntyre; Rachel Netzband; Gaston Bonenfant; Jason M Biegel; Clare Miller ...
4EHP-independent repression of endogenous mRNAs by the RNA-binding protein GIGYF2 border= 
Cinthia C Amaya Ramirez; Petra Hubbe ; Nicolas Mandel; Julien Béthune
Long noncoding RNA OCC-1 suppresses cell growth through destabilizing HuR protein in colorectal cancer border= 
Yang Lan; Xuewei Xiao; Zhengchi He; Yu Luo ; Chuanfang Wu ...
The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens border= 
James P B Lloyd; Daniel Lang; Andreas D Zimmer; Barry Causier; Ralf Reski ...
Cell-wall synthesis and ribosome maturation are co-regulated by an RNA switch in Mycobacterium tuberculosis border= 
Stefan Schwenk ; Alexandra Moores; Irene Nobeli; Timothy D McHugh; Kristine B Arnvig
Structural Biology
The structure of the TsaB/TsaD/TsaE complex reveals an unexpected mechanism for the bacterial t6A tRNA-modification border=  
Sophia Missoury; Stéphane Plancqueel; Ines Li de la Sierra-Gallay ; Wenhua Zhang; Dominique Liger ...
Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A border= 
Marcus Fislage; Jingji Zhang; Zuben Patrick Brown; Chandra Sekhar Mandava ; Suparna Sanyal ...
Methods Online
A general strategy for direct, enzyme-catalyzed conjugation of functional compounds to DNA border= 
Jochem Deen ; Su Wang; Sven Van Snick; Volker Leen; Kris Janssen ...
Post-transcriptional labeling by using Suzuki'Miyaura cross-coupling generates functional RNA probes border= 
Manisha B Walunj; Arun A Tanpure; Seergazhi G Srivatsan
Simultaneous determination of ribonucleoside and deoxyribonucleoside triphosphates in biological samples by hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry border= 
Ziqing Kong; Shaodong Jia; Anna Lena Chabes; Patrik Appelblad ; Richard Lundmark ...
TGMI: an efficient algorithm for identifying pathway regulators through evaluation of triple-gene mutual interaction border= 
Chathura Gunasekara; Kui Zhang; Wenping Deng; Laura Brown; Hairong Wei
riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions border= 
Nicholas R Waters ; Florence Abram; Fiona Brennan; Ashleigh Holmes; Leighton Pritchard
DeFine: deep convolutional neural networks accurately quantify intensities of transcription factor-DNA binding and facilitate evaluation of functional non-coding variants border= 
Meng Wang ; Cheng Tai; Weinan E; Liping Wei
Unsubscribe       Manage email alerts
Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK.

Our Privacy Policy sets out how Oxford University Press handles your personal information.

The content of this email is protected by copyright.

This email is intended for ------=_Part_1365850721.1529775010233--