Subject: Nucleic Acids Research Table of Contents for 02 December 2019 ------=_Part_1691339679.1574640260254 Content-Type: text/plain;charset=UTF-8 Oxford Academic *** {Nucleic Acids Research} *** Volume 47, Issue 21, 2 December 2019 Read this issue (https://academic.oup.com/nar/issue/47/21) ------------------------------ NAR Cancer is now accepting submissions! New Open Access journal NAR Cancer publishes original research, Survey and Summary articles at the intersection of the nucleic acids research and cancer fields, including cancer computational biology and data resources, DNA damage sensing and repair, gene regulation and chromatin, genomics, methods, nucleic acid-based therapeutics, and structural biology. Submit your research. ------------------------------ ============================= NAR Breakthrough Article ============================GLP-catalyzed H4K16me1 promotes 53BP1 recruitment to permit DNA damage repair and cell survival Xiaopeng Lu, Ming Tang, Qian Zhu, Qiaoyan Yang, Zhiming Li (https://academic.oup.com/nar/article/47/21/10977/5586835) ============================= Survey and Summary ============================Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases Ole K Tørresen, Bastiaan Star, Pablo Mier, Miguel A Andrade-Navarro, Alex Bateman (https://academic.oup.com/nar/article/47/21/10994/5580909) Retrons and their applications in genome engineering Anna J Simon, Andrew D Ellington, Ilya J Finkelstein (https://academic.oup.com/nar/article/47/21/11007/5584520) ============================= Chemical Biology and Nucleic Acid Chemistry ============================HER3-targeted protein chimera forms endosomolytic capsomeres and self-assembles into stealth nucleocapsids for systemic tumor homing of RNA interference in vivo Felix Alonso-Valenteen, Sayuri Pacheco, Dustin Srinivas, Altan Rentsendorj, David Chu (https://academic.oup.com/nar/article/47/21/11020/5588347) Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy Jaba Mitra, Taekjip Ha (https://academic.oup.com/nar/article/47/21/11044/5588345) A dynamic i-motif with a duplex stem-loop in the long terminal repeat promoter of the HIV-1 proviral genome modulates viral transcription Emanuela Ruggiero, Sara Lago, Primož Šket, Matteo Nadai, Ilaria Frasson (https://academic.oup.com/nar/article/47/21/11057/5608988) ============================= Computational Biology ============================Atomistic insight into the kinetic pathways for Watson--Crick to Hoogsteen transitions in DNA Jocelyne Vreede, Alberto Pérez de Alba Ortíz, Peter G Bolhuis, David W H Swenson (https://academic.oup.com/nar/article/47/21/11069/5609526) Direct interplay between stereochemistry and conformational preferences in aminoacylated oligoribonucleotides Anton A Polyansky, Mathias Kreuter, John D Sutherland, Bojan Zagrovic (https://academic.oup.com/nar/article/47/21/11077/5587633) The static and dynamic structural heterogeneities of B-DNA: extending Calladine--Dickerson rules Pablo D Dans, Alexandra Balaceanu, Marco Pasi, Alessandro S Patelli, Daiva Petkevičiūt- (https://academic.oup.com/nar/article/47/21/11090/5590661) New insights into protein--DNA binding specificity from hydrogen bond based comparative study Maoxuan Lin, Jun-tao Guo (https://academic.oup.com/nar/article/47/21/11103/5609529) ============================= Gene Regulation, Chromatin and Epigenetics ============================Chromatin Assembly Factor 1 (CAF-1) facilitates the establishment of facultative heterochromatin during pluripotency exit Liang Cheng, Xu Zhang, Yan Wang, Haiyun Gan, Xiaowei Xu (https://academic.oup.com/nar/article/47/21/11114/5581733) Exogenous pyruvate represses histone gene expression and inhibits cancer cell proliferation via the NAMPT--NAD+--SIRT1 pathway Rui Ma, Yinsheng Wu, Yansheng Zhai, Bicheng Hu, Wei Ma (https://academic.oup.com/nar/article/47/21/11132/5584692) The regulation of sequence specific NF-kappa B DNA binding and transcription by IKKbeta phosphorylation of NF-kappa B p50 at serine 80 Emma L Smith, Domenico Somma, David Kerrigan, Zoe McIntyre, John J Cole (https://academic.oup.com/nar/article/47/21/11151/5584523) Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans Flore Beurton, Przemyslaw Stempor, Matthieu Caron, Alex Appert, Yan Dong (https://academic.oup.com/nar/article/47/21/11164/5585547) CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length Christopher T Clarkson, Emma A Deeks, Ralph Samarista, Hulkar Mamayusupova, Victor B Zhurkin (https://academic.oup.com/nar/article/47/21/11181/5609524) RB, p130 and p107 differentially repress G1/S and G2/M genes after p53 activation Amy E Schade, Martin Fischer, James A DeCaprio (https://academic.oup.com/nar/article/47/21/11197/5610349) ============================= Genome Integrity, Repair and Replication ============================A novel mode of DnaA--DnaA interaction promotes ADP dissociation for reactivation of replication initiation activity Ryo Sugiyama, Kazutoshi Kasho, Kenya Miyoshi, Shogo Ozaki, Wataru Kagawa (https://academic.oup.com/nar/article/47/21/11209/5571582) Single-molecule visualization of human BLM helicase as it acts upon double- and single-stranded DNA substrates Chaoyou Xue, James M Daley, Xiaoyu Xue, Justin Steinfeld, Youngho Kwon (https://academic.oup.com/nar/article/47/21/11225/5572573) CDK and Mec1/Tel1-catalyzed phosphorylation of Sae2 regulate different responses to DNA damage Tai-Yuan Yu, Valerie E Garcia, Lorraine S Symington (https://academic.oup.com/nar/article/47/21/11238/5573548) Poly(ADP-ribose)-dependent chromatin unfolding facilitates the association of DNA-binding proteins with DNA at sites of damage Rebecca Smith, Théo Lebeaupin, Szilvia Juhász, Catherine Chapuis, Ostiane D'Augustin (https://academic.oup.com/nar/article/47/21/11250/5576124) UBR5 interacts with the replication fork and protects DNA replication from DNA polymerase eta toxicity Lina Cipolla, Federica Bertoletti, Antonio Maffia, Chih-Chao Liang, Alan R Lehmann (https://academic.oup.com/nar/article/47/21/11268/5581729) ============================= Molecular Biology ============================A novel and translational role for autophagy in antisense oligonucleotide trafficking and activity Joseph Ochaba, Andrew F Powers, Kaitlyn A Tremble, Sarah Greenlee, Noah M Post (https://academic.oup.com/nar/article/47/21/11284/5587634) Assembly and annotation of the mitochondrial minicircle genome of a differentiation-competent strain of Trypanosoma brucei Sinclair Cooper, Elizabeth S Wadsworth, Torsten Ochsenreiter, Alasdair Ivens, Nicholas J Savill (https://academic.oup.com/nar/article/47/21/11304/5609525) uS3/Rps3 controls fidelity of translation termination and programmed stop codon readthrough in co-operation with eIF3 Kristýna Poncová, Susan Wagner, Myrte Esmeralda Jansen, Petra Beznosková, Stanislava Gunišová (https://academic.oup.com/nar/article/47/21/11326/5603221) ============================= Nucleic Acid Enzymes ============================Ring-shaped replicative helicase encircles double-stranded DNA during unwinding Sihwa Joo, Bong H Chung, Mina Lee, Tai H Ha (https://academic.oup.com/nar/article/47/21/11344/5608995) Mutations of R882 change flanking sequence preferences of the DNA methyltransferase DNMT3A and cellular methylation patterns Max Emperle, Sabrina Adam, Stefan Kunert, Michael Dukatz, Annika Baude (https://academic.oup.com/nar/article/47/21/11355/5588689) ============================= RNA and RNA-protein complexes ============================Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal Himanshu Sharma, B Anand (https://academic.oup.com/nar/article/47/21/11368/5581731) ZAR1 and ZAR2 are required for oocyte meiotic maturation by regulating the maternal transcriptome and mRNA translational activation Yan Rong, Shu-Yan Ji, Ye-Zhang Zhu, Yun-Wen Wu, Li Shen (https://academic.oup.com/nar/article/47/21/11387/5584529) ============================= Structural Biology ============================Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus Arjan de Groot, Marina I Siponen, Romaric Magerand, Nicolas Eugénie, Raquel Martin-Arevalillo (https://academic.oup.com/nar/article/47/21/11403/5584639) Deciphering the activation and recognition mechanisms of Staphylococcus aureus response regulator ArlR Zhenlin Ouyang, Fang Zheng, Jared Y Chew, Yingmei Pei, Jinhong Zhou (https://academic.oup.com/nar/article/47/21/11418/5584646) Branch site bulge conformations in domain 6 determine functional sugar puckers in group II intron splicing Raphael Plangger, Michael Andreas Juen, Thomas Philipp Hoernes, Felix Nußbaumer, Johannes Kremser (https://academic.oup.com/nar/article/47/21/11430/5608997) ============================= Synthetic Biology and Bioengineering ============================Controlling aggregation of cholesterol-modified DNA nanostructures Alexander Ohmann, Kerstin Göpfrich, Himanshu Joshi, Rebecca F Thompson, Diana Sobota (https://academic.oup.com/nar/article/47/21/11441/5603226) Control of -C31 integrase-mediated site-specific recombination by protein trans-splicing Femi J Olorunniji, Makeba Lawson-Williams, Arlene L McPherson, Jane E Paget, W Marshall Stark (https://academic.oup.com/nar/article/47/21/11452/5610344) Characterization and repurposing of the endogenous Type I-F CRISPR--Cas system of Zymomonas mobilis for genome engineering Yanli Zheng, Jiamei Han, Baiyang Wang, Xiaoyun Hu, Runxia Li (https://academic.oup.com/nar/article/47/21/11461/5606620) ============================= Corrigendum ============================Transcriptome signature of cellular senescence Gabriel Casella, Rachel Munk, Kyoung Mi Kim, Yulan Piao, Supriyo De (https://academic.oup.com/nar/article/47/21/11476/5587628) Characterization of the Type III restriction endonuclease PstII from Providencia stuartii Alice Sears, Luke J Peakman, Geoffrey G Wilson, Mark D Szczelkun (https://academic.oup.com/nar/article/47/21/11477/5590659) Biogenesis of RNase P RNA from an intron requires co-assembly with cognate protein subunits Geeta Palsule, Venkat Gopalan, Amanda Simcox (https://academic.oup.com/nar/article/47/21/11480/5590634) ============================= Methods Online ============================Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets Frédéric Pont, Marie Tosolini, Jean J Fournié (https://academic.oup.com/nar/article/47/21/e133/5531181) regBase: whole genome base-wise aggregation and functional prediction for human non-coding regulatory variants Shijie Zhang, Yukun He, Huanhuan Liu, Haoyu Zhai, Dandan Huang (https://academic.oup.com/nar/article/47/21/e134/5568216) Novel bioinformatics quality control metric for next-generation sequencing experiments in the clinical context Maxim Ivanov, Mikhail Ivanov, Artem Kasianov, Ekaterina Rozhavskaya, Sergey Musienko (https://academic.oup.com/nar/article/47/21/e135/5568209) Assessment of kinship detection using RNA-seq data Natalia Blay, Eduard Casas, Iván Galván-Femenía, Jan Graffelman, Rafael de Cid (https://academic.oup.com/nar/article/47/21/e136/5566588) A tight cold-inducible switch built by coupling thermosensitive transcriptional and proteolytic regulatory parts Yang Zheng, Fankang Meng, Zihui Zhu, Weijia Wei, Zhi Sun (https://academic.oup.com/nar/article/47/21/e137/5570699) cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes Erica A K DePasquale, Daniel Schnell, Phillip Dexheimer, Kyle Ferchen, Stuart Hay (https://academic.oup.com/nar/article/47/21/e138/5569987) A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package Victor Levitsky, Elena Zemlyanskaya, Dmitry Oshchepkov, Olga Podkolodnaya, Elena Ignatieva (https://academic.oup.com/nar/article/47/21/e139/5570700) Next-generation forward genetic screens: using simulated data to improve the design of mapping-by-sequencing experiments in Arabidopsis David Wilson-Sánchez, Samuel Daniel Lup, Raquel Sarmiento-Mañús, María Rosa Ponce, José Luis Micol (https://academic.oup.com/nar/article/47/21/e140/5572568) Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer Antoine Daunay, Alex Duval, Laura G Baudrin, Olivier Buhard, Victor Renault (https://academic.oup.com/nar/article/47/21/e141/5570702) funtrp: identifying protein positions for variation driven functional tuning Maximilian Miller, Daniel Vitale, Peter C Kahn, Burkhard Rost, Yana Bromberg (https://academic.oup.com/nar/article/47/21/e142/5580908) Unsubscribe (http://cp20.com/unsubscribe) Manage email alerts (https://academic.oup.com/my-account/email-alerts) Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK. Our Privacy Policy (http://global.oup.com/privacy) sets out how Oxford University Press handles your personal information. The content of this email is protected by copyright. Oxford University Press This email is intended for bionet@evol.mcmaster.ca. ------=_Part_1691339679.1574640260254 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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New issue alert
 
 
 
 
NAR Cancer is now accepting submissions!
 
New Open Access journal NAR Cancer publishes original research, Survey and Summary articles at the intersection of the nucleic acids research and cancer fields, including cancer computational biology and data resources, DNA damage sensing and repair, gene regulation and chromatin, genomics, methods, nucleic acid-based therapeutics, and structural biology. Submit your research.
 
 
 
 
 
 
Nucleic Acids Research  
Volume 47 Issue 21
 
02 December 2019
 
button-issue.png
 
 
NAR Breakthrough Article
 
 
 
GLP-catalyzed H4K16me1 promotes 53BP1 recruitment to permit DNA damage repair and cell survival border= 
 
Xiaopeng Lu ; Ming Tang; Qian Zhu; Qiaoyan Yang; Zhiming Li ...
 
 
 
Survey and Summary
 
 
 
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases border= 
 
Ole K Tørresen ; Bastiaan Star; Pablo Mier; Miguel A Andrade-Navarro; Alex Bateman ...
 
 
Retrons and their applications in genome engineering border=  
 
Anna J Simon; Andrew D Ellington; Ilya J Finkelstein
 
 
 
Chemical Biology and Nucleic Acid Chemistry
 
 
 
HER3-targeted protein chimera forms endosomolytic capsomeres and self-assembles into stealth nucleocapsids for systemic tumor homing of RNA interference in vivo  border= 
 
Felix Alonso-Valenteen; Sayuri Pacheco ; Dustin Srinivas; Altan Rentsendorj; David Chu ...
 
 
Streamlining effects of extra telomeric repeat on telomeric DNA folding revealed by fluorescence-force spectroscopy border= 
 
Jaba Mitra ; Taekjip Ha
 
 
A dynamic i-motif with a duplex stem-loop in the long terminal repeat promoter of the HIV-1 proviral genome modulates viral transcription border= 
 
Emanuela Ruggiero ; Sara Lago; Primož Šket; Matteo Nadai; Ilaria Frasson ...
 
 
 
Computational Biology
 
 
 
Atomistic insight into the kinetic pathways for Watson'Crick to Hoogsteen transitions in DNA border= 
 
Jocelyne Vreede ; Alberto Pérez de Alba Ortíz; Peter G Bolhuis; David W H Swenson
 
 
Direct interplay between stereochemistry and conformational preferences in aminoacylated oligoribonucleotides border= 
 
Anton A Polyansky ; Mathias Kreuter; John D Sutherland; Bojan Zagrovic
 
 
The static and dynamic structural heterogeneities of B-DNA: extending Calladine'Dickerson rules border= 
 
Pablo D Dans ; Alexandra Balaceanu; Marco Pasi; Alessandro S Patelli; Daiva Petkevičiūt- ...
 
 
New insights into protein'DNA binding specificity from hydrogen bond based comparative study border= 
 
Maoxuan Lin ; Jun-tao Guo
 
 
 
Gene Regulation, Chromatin and Epigenetics
 
 
 
Chromatin Assembly Factor 1 (CAF-1) facilitates the establishment of facultative heterochromatin during pluripotency exit border= 
 
Liang Cheng ; Xu Zhang; Yan Wang; Haiyun Gan; Xiaowei Xu ...
 
 
Exogenous pyruvate represses histone gene expression and inhibits cancer cell proliferation via the NAMPT'NAD+ 'SIRT1 pathway border= 
 
Rui Ma; Yinsheng Wu ; Yansheng Zhai; Bicheng Hu; Wei Ma ...
 
 
The regulation of sequence specific NF-kappa B DNA binding and transcription by IKKbeta phosphorylation of NF-kappa B p50 at serine 80 border= 
 
Emma L Smith ; Domenico Somma; David Kerrigan; Zoe McIntyre; John J Cole ...
 
 
Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans  border= 
 
Flore Beurton; Przemyslaw Stempor ; Matthieu Caron; Alex Appert; Yan Dong ...
 
 
CTCF-dependent chromatin boundaries formed by asymmetric nucleosome arrays with decreased linker length border= 
 
Christopher T Clarkson ; Emma A Deeks; Ralph Samarista; Hulkar Mamayusupova; Victor B Zhurkin ...
 
 
RB, p130 and p107 differentially repress G1/S and G2/M genes after p53 activation border= 
 
Amy E Schade ; Martin Fischer; James A DeCaprio
 
 
 
Genome Integrity, Repair and Replication
 
 
 
A novel mode of DnaA'DnaA interaction promotes ADP dissociation for reactivation of replication initiation activity border= 
 
Ryo Sugiyama ; Kazutoshi Kasho; Kenya Miyoshi; Shogo Ozaki; Wataru Kagawa ...
 
 
Single-molecule visualization of human BLM helicase as it acts upon double- and single-stranded DNA substrates border= 
 
Chaoyou Xue ; James M Daley; Xiaoyu Xue; Justin Steinfeld; Youngho Kwon ...
 
 
CDK and Mec1/Tel1-catalyzed phosphorylation of Sae2 regulate different responses to DNA damage border= 
 
Tai-Yuan Yu ; Valerie E Garcia; Lorraine S Symington
 
 
Poly(ADP-ribose)-dependent chromatin unfolding facilitates the association of DNA-binding proteins with DNA at sites of damage border= 
 
Rebecca Smith ; Théo Lebeaupin; Szilvia Juhász; Catherine Chapuis; Ostiane D'Augustin ...
 
 
UBR5 interacts with the replication fork and protects DNA replication from DNA polymerase eta toxicity border= 
 
Lina Cipolla ; Federica Bertoletti; Antonio Maffia; Chih-Chao Liang; Alan R Lehmann ...
 
 
 
Molecular Biology
 
 
 
A novel and translational role for autophagy in antisense oligonucleotide trafficking and activity border= 
 
Joseph Ochaba ; Andrew F Powers; Kaitlyn A Tremble; Sarah Greenlee; Noah M Post ...
 
 
Assembly and annotation of the mitochondrial minicircle genome of a differentiation-competent strain of Trypanosoma brucei  border= 
 
Sinclair Cooper; Elizabeth S Wadsworth ; Torsten Ochsenreiter; Alasdair Ivens; Nicholas J Savill ...
 
 
uS3/Rps3 controls fidelity of translation termination and programmed stop codon readthrough in co-operation with eIF3 border= 
 
Kristýna Poncová ; Susan Wagner; Myrte Esmeralda Jansen; Petra Beznosková; Stanislava Gunišová ...
 
 
 
Nucleic Acid Enzymes
 
 
 
Ring-shaped replicative helicase encircles double-stranded DNA during unwinding border= 
 
Sihwa Joo ; Bong H Chung; Mina Lee; Tai H Ha
 
 
Mutations of R882 change flanking sequence preferences of the DNA methyltransferase DNMT3A and cellular methylation patterns border= 
 
Max Emperle ; Sabrina Adam; Stefan Kunert; Michael Dukatz; Annika Baude ...
 
 
 
RNA and RNA-protein complexes
 
 
 
Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal border= 
 
Himanshu Sharma ; B Anand
 
 
ZAR1 and ZAR2 are required for oocyte meiotic maturation by regulating the maternal transcriptome and mRNA translational activation border= 
 
Yan Rong ; Shu-Yan Ji; Ye-Zhang Zhu; Yun-Wen Wu; Li Shen ...
 
 
 
Structural Biology
 
 
 
Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus  border= 
 
Arjan de Groot; Marina I Siponen ; Romaric Magerand; Nicolas Eugénie; Raquel Martin-Arevalillo ...
 
 
Deciphering the activation and recognition mechanisms of Staphylococcus aureus response regulator ArlR border= 
 
Zhenlin Ouyang; Fang Zheng ; Jared Y Chew; Yingmei Pei; Jinhong Zhou ...
 
 
Branch site bulge conformations in domain 6 determine functional sugar puckers in group II intron splicing border= 
 
Raphael Plangger ; Michael Andreas Juen; Thomas Philipp Hoernes; Felix Nußbaumer; Johannes Kremser ...
 
 
 
Synthetic Biology and Bioengineering
 
 
 
Controlling aggregation of cholesterol-modified DNA nanostructures border= 
 
Alexander Ohmann ; Kerstin Göpfrich; Himanshu Joshi; Rebecca F Thompson; Diana Sobota ...
 
 
Control of -C31 integrase-mediated site-specific recombination by protein trans -splicing border= 
 
Femi J Olorunniji; Makeba Lawson-Williams ; Arlene L McPherson; Jane E Paget; W Marshall Stark ...
 
 
Characterization and repurposing of the endogenous Type I-F CRISPR'Cas system of Zymomonas mobilis for genome engineering border= 
 
Yanli Zheng; Jiamei Han ; Baiyang Wang; Xiaoyun Hu; Runxia Li ...
 
 
 
Corrigendum
 
 
 
Transcriptome signature of cellular senescence 
 
Gabriel Casella; Rachel Munk; Kyoung Mi Kim ; Yulan Piao; Supriyo De ...
 
 
Characterization of the Type III restriction endonuclease PstII from Providencia stuartii  border= 
 
Alice Sears; Luke J Peakman ; Geoffrey G Wilson; Mark D Szczelkun
 
 
Biogenesis of RNase P RNA from an intron requires co-assembly with cognate protein subunits border= 
 
Geeta Palsule ; Venkat Gopalan; Amanda Simcox
 
 
 
Methods Online
 
 
 
Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets border= 
 
Frédéric Pont ; Marie Tosolini; Jean J Fournié
 
 
regBase: whole genome base-wise aggregation and functional prediction for human non-coding regulatory variants border= 
 
Shijie Zhang ; Yukun He; Huanhuan Liu; Haoyu Zhai; Dandan Huang ...
 
 
Novel bioinformatics quality control metric for next-generation sequencing experiments in the clinical context border= 
 
Maxim Ivanov ; Mikhail Ivanov; Artem Kasianov; Ekaterina Rozhavskaya; Sergey Musienko ...
 
 
Assessment of kinship detection using RNA-seq data border=  
 
Natalia Blay; Eduard Casas; Iván Galván-Femenía; Jan Graffelman; Rafael de Cid ...
 
 
A tight cold-inducible switch built by coupling thermosensitive transcriptional and proteolytic regulatory parts border= 
 
Yang Zheng ; Fankang Meng; Zihui Zhu; Weijia Wei; Zhi Sun ...
 
 
cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes border= 
 
Erica A K DePasquale ; Daniel Schnell; Phillip Dexheimer; Kyle Ferchen; Stuart Hay ...
 
 
A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package border= 
 
Victor Levitsky ; Elena Zemlyanskaya; Dmitry Oshchepkov; Olga Podkolodnaya; Elena Ignatieva ...
 
 
Next-generation forward genetic screens: using simulated data to improve the design of mapping-by-sequencing experiments in Arabidopsis border= 
 
David Wilson-Sánchez ; Samuel Daniel Lup; Raquel Sarmiento-Mañús; María Rosa Ponce; José Luis Micol
 
 
Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer border= 
 
Antoine Daunay ; Alex Duval; Laura G Baudrin; Olivier Buhard; Victor Renault ...
 
 
funtrp: identifying protein positions for variation driven functional tuning border= 
 
Maximilian Miller ; Daniel Vitale; Peter C Kahn; Burkhard Rost; Yana Bromberg
 
 
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