Subject: Molecular Biology and Evolution Table of Contents for November 2019 ------=_Part_1987842123.1572114585151 Content-Type: text/plain;charset=UTF-8 Oxford Academic *** {Molecular Biology and Evolution} *** Volume 36, Issue 11, 1 November 2019 Read this issue (https://academic.oup.com/mbe/issue/36/11) ============================= Fast Track ============================"Ghost Introgression" As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex Dezhi Zhang, Linfang Tang, Yalin Cheng, Yan Hao, Ying Xiong (https://academic.oup.com/mbe/article/36/11/2375/5541797) Multiple Plasticity Regulators Reveal Targets Specifying an Induced Predatory Form in Nematodes Linh T Bui, Erik J Ragsdale (https://academic.oup.com/mbe/article/36/11/2387/5541796) ============================= Discoveries ============================Parallel Evolution of HIV-1 in a Long-Term Experiment Frederic Bertels, Christine Leemann, Karin J Metzner, Roland R Regoes (https://academic.oup.com/mbe/article/36/11/2400/5524887) High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies Monika Cechova, Robert S Harris, Marta Tomaszkiewicz, Barbara Arbeithuber, Francesca Chiaromonte (https://academic.oup.com/mbe/article/36/11/2415/5526925) Transcriptional Enhancers in the FOXP2 Locus Underwent Accelerated Evolution in the Human Lineage Alfredo Leandro Caporale, Catalina M Gonda, Lucía Florencia Franchini (https://academic.oup.com/mbe/article/36/11/2432/5540333) Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut Bo-Wen Zhang, Lin-Lin Xu, Nan Li, Peng-Cheng Yan, Xin-Hua Jiang (https://academic.oup.com/mbe/article/36/11/2451/5488197) Symbiosis, Selection, and Novelty: Freshwater Adaptation in the Unique Sponges of Lake Baikal Nathan J Kenny, Bruna Plese, Ana Riesgo, Valeria B Itskovich (https://academic.oup.com/mbe/article/36/11/2462/5522662) Admixture between Ancient Lineages, Selection, and the Formation of Sympatric Stickleback Species-Pairs Laura L Dean, Isabel S Magalhaes, Andrew Foote, Daniele D'Agostino, Suzanne McGowan (https://academic.oup.com/mbe/article/36/11/2481/5531462) MicroRNA Gene Regulation in Extremely Young and Parallel Adaptive Radiations of Crater Lake Cichlid Fish Paolo Franchini, Peiwen Xiong, Carmelo Fruciano, Ralf F Schneider, Joost M Woltering (https://academic.oup.com/mbe/article/36/11/2498/5545549) Coevolution of Sites under Immune Selection Shapes Epstein--Barr Virus Population Structure Fanny Wegner, Florent Lassalle, Daniel P Depledge, François Balloux, Judith Breuer (https://academic.oup.com/mbe/article/36/11/2512/5524889) Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes Greta Busseni, Fabio Rocha Jimenez Vieira, Alberto Amato, Eric Pelletier, Juan J Pierella Karlusich (https://academic.oup.com/mbe/article/36/11/2522/5525704) De Novo Mutation Rate Estimation in Wolves of Known Pedigree Evan M Koch, Rena M Schweizer, Teia M Schweizer, Daniel R Stahler, Douglas W Smith (https://academic.oup.com/mbe/article/36/11/2536/5531468) Evolution of the Cholesterol Biosynthesis Pathway in Animals Tingting Zhang, Dongwei Yuan, Jun Xie, Yongxing Lei, Jianguo Li (https://academic.oup.com/mbe/article/36/11/2548/5541798) Genomic Patterns of Local Adaptation under Gene Flow in Arabidopsis lyrata Tuomas Hämälä, Outi Savolainen (https://academic.oup.com/mbe/article/36/11/2557/5522663) Population Gene Introgression and High Genome Plasticity for the Zoonotic Pathogen Streptococcus agalactiae Vincent P Richards, Irina M Velsko, Md Tauqeer Alam, Ruth N Zadoks, Shannon D Manning (https://academic.oup.com/mbe/article/36/11/2572/5539754) EPAS1 Gain-of-Function Mutation Contributes to High-Altitude Adaptation in Tibetan Horses Xuexue Liu, Yanli Zhang, Yefang Li, Jianfei Pan, Dandan Wang (https://academic.oup.com/mbe/article/36/11/2591/5526924) ============================= Methods ============================GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects Elodie Laine, Yasaman Karami, Alessandra Carbone (https://academic.oup.com/mbe/article/36/11/2604/5548199) ============================= Protocol ============================Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model Verity Hill, Guy Baele (https://academic.oup.com/mbe/article/36/11/2620/5541799) ============================= News ============================Scientists Explore Diversity of Han Chinese Joseph Caspermeyer (https://academic.oup.com/mbe/article/36/11/2629/5568252) Scientists Crack Origin of the Persian Walnut Joseph Caspermeyer (https://academic.oup.com/mbe/article/36/11/2630/5568251) Unsubscribe (http://cp20.com/unsubscribe) Manage email alerts (https://academic.oup.com/my-account/email-alerts) Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK. Our Privacy Policy (http://global.oup.com/privacy) sets out how Oxford University Press handles your personal information. The content of this email is protected by copyright. Oxford University Press This email is intended for bionet@evol.biology.mcmaster.ca. ------=_Part_1987842123.1572114585151 Content-Type: text/html;charset=UTF-8 Oxford Academic
 
 
 
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New issue alert
 
 
 
 
 
 
Molecular Biology and Evolution  
Volume 36 Issue 11
 
November 2019
 
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Fast Track
 
 
 
"Ghost Introgression" As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex 
 
Dezhi Zhang; Linfang Tang; Yalin Cheng ; Yan Hao; Ying Xiong ...
 
 
Multiple Plasticity Regulators Reveal Targets Specifying an Induced Predatory Form in Nematodes 
 
Linh T Bui; Erik J Ragsdale
 
 
 
Discoveries
 
 
 
Parallel Evolution of HIV-1 in a Long-Term Experiment border= 
 
Frederic Bertels; Christine Leemann; Karin J Metzner; Roland R Regoes
 
 
High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies border= 
 
Monika Cechova ; Robert S Harris; Marta Tomaszkiewicz; Barbara Arbeithuber; Francesca Chiaromonte ...
 
 
Transcriptional Enhancers in the FOXP2 Locus Underwent Accelerated Evolution in the Human Lineage 
 
Alfredo Leandro Caporale; Catalina M Gonda; Lucía Florencia Franchini
 
 
Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut 
 
Bo-Wen Zhang; Lin-Lin Xu; Nan Li ; Peng-Cheng Yan; Xin-Hua Jiang ...
 
 
Symbiosis, Selection, and Novelty: Freshwater Adaptation in the Unique Sponges of Lake Baikal border= 
 
Nathan J Kenny ; Bruna Plese; Ana Riesgo; Valeria B Itskovich
 
 
Admixture between Ancient Lineages, Selection, and the Formation of Sympatric Stickleback Species-Pairs border= 
 
Laura L Dean ; Isabel S Magalhaes; Andrew Foote; Daniele D'Agostino; Suzanne McGowan ...
 
 
MicroRNA Gene Regulation in Extremely Young and Parallel Adaptive Radiations of Crater Lake Cichlid Fish 
 
Paolo Franchini; Peiwen Xiong; Carmelo Fruciano ; Ralf F Schneider; Joost M Woltering ...
 
 
Coevolution of Sites under Immune Selection Shapes Epstein'Barr Virus Population Structure border= 
 
Fanny Wegner ; Florent Lassalle; Daniel P Depledge; François Balloux; Judith Breuer
 
 
Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes border= 
 
Greta Busseni ; Fabio Rocha Jimenez Vieira; Alberto Amato; Eric Pelletier; Juan J Pierella Karlusich ...
 
 
De Novo Mutation Rate Estimation in Wolves of Known Pedigree border= 
 
Evan M Koch; Rena M Schweizer; Teia M Schweizer; Daniel R Stahler; Douglas W Smith ...
 
 
Evolution of the Cholesterol Biosynthesis Pathway in Animals 
 
Tingting Zhang; Dongwei Yuan; Jun Xie ; Yongxing Lei; Jianguo Li ...
 
 
Genomic Patterns of Local Adaptation under Gene Flow in Arabidopsis lyrata 
 
Tuomas Hämälä; Outi Savolainen
 
 
Population Gene Introgression and High Genome Plasticity for the Zoonotic Pathogen Streptococcus agalactiae  border= 
 
Vincent P Richards; Irina M Velsko ; Md Tauqeer Alam; Ruth N Zadoks; Shannon D Manning ...
 
 
EPAS1 Gain-of-Function Mutation Contributes to High-Altitude Adaptation in Tibetan Horses border= 
 
Xuexue Liu ; Yanli Zhang; Yefang Li; Jianfei Pan; Dandan Wang ...
 
 
 
Methods
 
 
 
GEMME: A Simple and Fast Global Epistatic Model Predicting Mutational Effects border= 
 
Elodie Laine ; Yasaman Karami; Alessandra Carbone
 
 
 
Protocol
 
 
 
Bayesian Estimation of Past Population Dynamics in BEAST 1.10 Using the Skygrid Coalescent Model border= 
 
Verity Hill ; Guy Baele
 
 
 
News
 
 
 
Scientists Explore Diversity of Han Chinese 
 
Joseph Caspermeyer
 
 
Scientists Crack Origin of the Persian Walnut 
 
Joseph Caspermeyer
 
 
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