Subject: Bioinformatics Table of Contents for 1 April 2017 Oxford Academic
oxford_logo.jpg
New issue alert
Bioinformatics
Volume 33 Issue 7
1 April 2017
button-issue.png
DISCOVERY NOTE
SYSTEMS BIOLOGY
Feature selection using a one dimensional na√Įve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires border=
Mattia Cinelli ; , Yuxin Sun; Katharine Best; James M. Heather ; Shlomit Reich-Zeliger ...
ORIGINAL PAPERS
GENOME ANALYSIS
DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter
Bryan Quach ; Terrence S. Furey
Improved VCF normalization for accurate VCF comparison
Arash Bayat ; Bruno Ga√ęta; Aleksandar Ignjatovic ; Sri Parameswaran
PHYLOGENETICS
Fast and accurate phylogeny reconstruction using filtered spaced-word matches border=
Chris-André Leimeister ; Salma Sohrabi-Jahromi; Burkhard Morgenstern
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses
Edwin Jacox ; Mathias Weller; Eric Tannier ; Celine Scornavacca
STRUCTURAL BIOINFORMATICS
A comprehensive benchmark of RNA'RNA interaction prediction tools for all domains of life border=
Sinan Uńüur Umu ; Paul P. Gardner
The structural bioinformatics library: modeling in biomolecular science and beyond
Frédéric Cazals ; Tom Dreyfus
Statistical inference of protein structural alignments using information and compression
James H. Collier ; Lloyd Allison; Arthur M. Lesk ; Peter J. Stuckey; Maria Garcia de la Banda ...
Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity
Surendra S. Negi ; Werner Braun
GENETICS AND POPULATION ANALYSIS
RENT+: an improved method for inferring local genealogical trees from haplotypes with recombination
Sajad Mirzaei ; Yufeng Wu
SYSTEMS BIOLOGY
Context-sensitive network-based disease genetics prediction and its implications in drug discovery
Yang Chen ; Rong Xu
Advanced Boolean modeling of biological networks applied to systems pharmacology
Itziar Irurzun-Arana ; Jos√© Mart√≠n Pastor; I√Īaki F. Troc√≥niz ; Jos√© David G√≥mez-Mantilla
Parameter estimation for dynamical systems with discrete events and logical operations
Fabian Fröhlich ; Fabian J. Theis; Joachim O. Rädler ; Jan Hasenauer
TRFBA: an algorithm to integrate genome-scale metabolic and transcriptional regulatory networks with incorporation of expression data
Ehsan Motamedian ; Maryam Mohammadi; Seyed Abbas Shojaosadati ; Mona Heydari
BIOIMAGE INFORMATICS
Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines border=
George Teodoro ; Tahsin M. Kurç; Luís F. R. Taveira ; Alba C. M. A. Melo; Yi Gao ...
Automated neuron tracing using probability hypothesis density filtering
Miroslav Radojevińá ; Erik Meijering
APPLICATIONS NOTES
GENOME ANALYSIS
PanViz: interactive visualization of the structure of functionally annotated pangenomes border=
Thomas Lin Pedersen ; Intawat Nookaew; David Wayne Ussery ; Maria Månsson
SVScore: an impact prediction tool for structural variation border=
Liron Ganel ; Haley J. Abel; FinMetSeq Consortium ; Ira M. Hall
SEQUENCE ANALYSIS
RECKONER: read error corrector based on KMC
Maciej DŇāugosz ; Sebastian Deorowicz
MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes
Wei Zhou; Ruilin Li; Shuo Yuan; ChangChun Liu ; Shaowen Yao ...
pHMM-tree: phylogeny of profile hidden Markov models
Luyang Huo ; Han Zhang; Xueting Huo ; Yasong Yang; Xueqiong Li ...
SYSTEMS BIOLOGY
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks border=
Irina Balaur ; Alexander Mazein; Mansoor Saqi ; Artem Lysenko; Christopher J. Rawlings ...
DATA AND TEXT MINING
Green listed'a CRISPR screen tool
Sudeepta Kumar Panda ; Sanjay V. Boddul; Guillermina Yanek Jiménez-Andrade ; Long Jiang; Zsolt Kasza ...
DATABASES AND ONTOLOGIES
RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data
Ravi D. Shankar ; Sanchita Bhattacharya; Chethan Jujjavarapu ; Sandra Andorf; Jeffery A. Wiser ...
ontologyX: a suite of R packages for working with ontological data border=
Daniel Greene ; Sylvia Richardson; Ernest Turro
LETTER TO THE EDITOR
SYSTEMS BIOLOGY
Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods
√ mer Nebil Yaverońülu ; No√ęl Malod-Dognin; Tijana Milenkovińá ; NataŇ°a PrŇĺulj
Unsubscribe † † † † † Manage email alerts
Written requests to unsubscribe can be sent to: Journals Marketing, Oxford University Press, Great Clarendon Street, Oxford, OX2 6DP, UK.

The content of this email is protected by copyright.
oxforde_university.jpg
† † † † † † † † † † † † † † † † †

Oxford University Press
Great Clarendon Street
Oxford OX2 6DP
United Kingdom

This email is intended for bionet@evol.mcmaster.ca.